PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5512.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 292aa    MW: 32558 Da    PI: 9.2065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5512.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.86.1e-55131401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhP+deel+++yL++k+++ ++ + ++i++vd++k+ePwdLp k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++k + el
  Dca5512.1  13 LPPGFRFHPSDEELITYYLANKISDPSFVC-RAIADVDLNKCEPWDLPGKAKMRGKEWYFFSLRDRKYPTGVRTNRATSTGYWKTTGKDKEIYNKvSIEL 111
                79*************************999.89***************9999999***************************************977788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfykgrap+gekt+Wvmheyrl
  Dca5512.1 112 VGMKKTLVFYKGRAPRGEKTSWVMHEYRL 140
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6411161IPR003441NAC domain
PROSITE profilePS5100560.28713161IPR003441NAC domain
PfamPF023652.3E-2814140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
METGDEKPKD ESLPPGFRFH PSDEELITYY LANKISDPSF VCRAIADVDL NKCEPWDLPG  60
KAKMRGKEWY FFSLRDRKYP TGVRTNRATS TGYWKTTGKD KEIYNKVSIE LVGMKKTLVF  120
YKGRAPRGEK TSWVMHEYRL HSTSAYRSAK DEWVVCRVFQ KSVGIKKYTT TTQQSTCSRS  180
ILNLEMGTNQ LVLPLAPTQY PSMGQNYMVM NNLELVELSR ALRNDGGSTS TTLPIHNPLD  240
DAGVGAGAGD GGFTISSLNL NLGASQGPSL RPMMIQQGAT QDHVMTSSML NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B4e-521216716171NAC domain-containing protein 19
4dul_A4e-521216716171NAC domain-containing protein 19
1ut7_B4e-521216716171NO APICAL MERISTEM PROTEIN
1ut7_A4e-521216716171NO APICAL MERISTEM PROTEIN
1ut4_B4e-521216716171NO APICAL MERISTEM PROTEIN
1ut4_A4e-521216716171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669469.11e-135PREDICTED: protein CUP-SHAPED COTYLEDON 1
SwissprotO040176e-79NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A0K9RTX11e-136A0A0K9RTX1_SPIOL; Uncharacterized protein
STRINGPOPTR_0018s03910.11e-120(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-102NAC domain containing protein 38